Package: pal2nal (14.1-3)

Links for pal2nal

Debian Resources:

Download Source Package pal2nal:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Pjotr Prins (QA Page)
Steffen Moeller (QA Page)

External Resources:

Homepage [www.bork.embl.de]

Similar packages:

converts proteins to genomic DNA alignment

PAL2NAL is a program that converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon-based DNA alignment. The program automatically assigns the corresponding codon sequence even if the input DNA sequence has mismatches with the input protein sequence, or contains UTRs, polyA tails. It can also deal with frame shifts in the input alignment, which is suitable for the analysis of pseudogenes. The resulting codon-based DNA alignment can further be subjected to the calculation of synonymous (Ks) and non-synonymous (Ka) substitution rates.

Other Packages Related to pal2nal

depends

recommends

suggests

enhances

rec: paml

PAML (Phylogenetic Analysis by Maximum Likelihood)

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Architecture	Package Size	Installed Size	Files
all	17.3 kB	91.0 kB	[list of files]