Package: r-bioc-grohmm (1.32.0-1)

[ Source: r-bioc-grohmm  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

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Architecture	Package Size	Installed Size	Files
amd64	4,333.2 kB	4,503.0 kB	[list of files]
arm64	4,331.0 kB	4,511.0 kB	[list of files]
armel	4,331.6 kB	4,510.0 kB	[list of files]
armhf	4,328.5 kB	4,510.0 kB	[list of files]
i386	4,334.0 kB	4,502.0 kB	[list of files]
mips64el	4,330.4 kB	4,514.0 kB	[list of files]
mipsel	4,331.4 kB	4,513.0 kB	[list of files]
ppc64el	4,336.3 kB	4,511.0 kB	[list of files]
s390x	4,331.4 kB	4,499.0 kB	[list of files]