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[ Source: tabix  ]

Package: tabix (0.2.6-1)

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generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosme), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

Tags: Field: Biology, Implemented in: C, User Interface: interface::commandline, network::client, Network Protocol: FTP, HTTP, Role: role::program, scope::utility, Purpose: Compressing, Filtering, Works with: Text

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Download tabix

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Architecture Package Size Installed Size Files
sparc 55.6 kB156.0 kB [list of files]