Package: tree-puzzle (5.3~rc16+dfsg-9 and others)

[ Source: tree-puzzle  ]

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

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• dep: libsprng2

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• rec: tree-puzzle-doc

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• sug: phylip

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• sug: treetool

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Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.3~rc16+dfsg-9+b1	166.5 kB	493.0 kB	[list of files]
amd64	5.3~rc16+dfsg-9+b1	165.3 kB	397.0 kB	[list of files]
arm64	5.3~rc16+dfsg-9+b1	150.5 kB	428.0 kB	[list of files]
armel	5.3~rc16+dfsg-9+b1	160.0 kB	412.0 kB	[list of files]
armhf	5.3~rc16+dfsg-9+b1	150.9 kB	304.0 kB	[list of files]
hppa (unofficial port)	5.3~rc16+dfsg-9+b1	158.1 kB	401.0 kB	[list of files]
i386	5.3~rc16+dfsg-9+b1	177.7 kB	484.0 kB	[list of files]
ia64 (unofficial port)	5.3~rc16+dfsg-9+b1	214.9 kB	785.0 kB	[list of files]
m68k (unofficial port)	5.3~rc16+dfsg-9+b1	152.7 kB	420.0 kB	[list of files]
mips64el	5.3~rc16+dfsg-9+b1	164.8 kB	508.0 kB	[list of files]
ppc64 (unofficial port)	5.3~rc16+dfsg-9+b1	176.8 kB	493.0 kB	[list of files]
ppc64el	5.3~rc16+dfsg-9+b1	175.0 kB	493.0 kB	[list of files]
riscv64	5.3~rc16+dfsg-9+b2	166.1 kB	345.0 kB	[list of files]
s390x	5.3~rc16+dfsg-9+b1	175.4 kB	440.0 kB	[list of files]
sh4 (unofficial port)	5.3~rc16+dfsg-9+b1	178.0 kB	365.0 kB	[list of files]
sparc64 (unofficial port)	5.3~rc16+dfsg-9+b1	152.5 kB	1,070.0 kB	[list of files]
x32 (unofficial port)	5.3~rc16+dfsg-9+b1	161.8 kB	376.0 kB	[list of files]