Package: xpore (2.1-2)

[ Source: xpore  ]

Nanopore analysis of differential RNA modifications

RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives.

The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype.

Other Packages Related to xpore

• dep: pyensembl

  installs data from the Ensembl genome database

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-ujson

  ultra fast JSON encoder and decoder for Python 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• sug: xpore-doc

  documentation for the xpore Python package

Download xpore

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Architecture	Package Size	Installed Size	Files
all	33.9 kB	160.0 kB	[list of files]