Package: snakemake (7.32.4-3)

[ Source: snakemake  ]

pythonic workflow management system

Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.

Other Packages Related to snakemake

• dep: ca-certificates

  Common CA certificates

• dep: libjs-bootstrap

  HTML, CSS and JS framework

• dep: libjs-jquery

  JavaScript library for dynamic web applications

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-configargparse

  replacement for argparse with config files and environment variables

• dep: python3-connection-pool

  thread-safe connection pool for Python3

• dep: python3-datrie

  Super-fast, efficiently stored Trie for Python 3

• dep: python3-docutils

  text processing system for reStructuredText (implemented in Python 3)

• dep: python3-git

  Python library to interact with Git repositories

• dep: python3-humanfriendly

  Python3 library to make user friendly text interfaces

• dep: python3-jinja2 (>= 3.0~)

  small but fast and easy to use stand-alone template engine

• dep: python3-jsonschema

  An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)

• dep: python3-nbformat

  Jupyter notebook format (Python 3)

• dep: python3-packaging

  core utilities for python3 packages

• dep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python3-platformdirs

  determining appropriate platform-specific directories (Python 3)

• dep: python3-psutil

  module providing convenience functions for managing processes (Python3)

• dep: python3-pulp (>= 2.0~)

  LP modeler - Python 3.x

• dep: python3-ratelimiter

  simple Python library for limiting the rate of operations

• dep: python3-requests

  elegant and simple HTTP library for Python3, built for human beings

• dep: python3-retry

  easy to use retry decorator

• dep: python3-smart-open (>= 3.0~)

  utils for streaming large files

• dep: python3-stopit

  Timeout control decorator and context manager for Python3

• dep: python3-tabulate

  pretty-print tabular data in Python3

• dep: python3-throttler

  easy throttling with asyncio support for Python3

• dep: python3-toposort

  topological sort algorithm - Python 3 module

• dep: python3-wrapt

  decorators, wrappers and monkey patching. - Python 3.x

• dep: python3-yaml

  YAML parser and emitter for Python3

• dep: python3-yte

  YAML template engine with Python expressions

• rec: cwltool

  Common Workflow Language reference implementation

• rec: imagemagick

  image manipulation programs -- binaries
  also a virtual package provided by graphicsmagick-imagemagick-compat, imagemagick-6.q16

• rec: python3-azure-storage

  Microsoft Azure Storage Library for Python 3.x

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-boto3

  Python interface to Amazon's Web Services - Python 3.x

• rec: python3-botocore

  Low-level, data-driven core of boto 3 (Python 3)

• rec: python3-dropbox

  Official Dropbox API Client (Python3 version)

• rec: python3-flask

  micro web framework based on Werkzeug and Jinja2 - Python 3.x

• rec: python3-ftputil

  high-level FTP client library for Python

• rec: python3-irodsclient

  Client API for iRods

• rec: python3-kubernetes

  Kubernetes Python client - Python 3.x

• rec: python3-pygments

  syntax highlighting package written in Python 3

• rec: python3-tz

  Python3 version of the Olson timezone database

• rec: python3-urllib3

  HTTP library with thread-safe connection pooling for Python3

• rec: python3-yappi

  Yet Another Python Profiler - Python 3.x

• sug: slurm-client

  Slurm client side commands

• sug: snakemake-doc

  documentation for pythonic workflow management system

Download snakemake

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	310.1 kB	1,560.0 kB	[list of files]