Package: samblaster (0.1.26-4 and others)

[ Source: samblaster  ]

marks duplicates, extracts discordant/split reads

Current "next-generation" sequencing technologies cannot tell what exact sequence they will be reading. They take what is available. And if some sequences are read very often, then this needs some extra biomedical thinking. The genome could for instance be duplicated.

samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.

Other Packages Related to samblaster

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.36) [ia64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.8) [alpha]

• dep: libgcc-s1 (>= 3.0) [sparc64]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC támogató programkönyvtár

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC támogató programkönyvtár

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

Download samblaster

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.1.26-4	24.8 kB	86.0 kB	[list of files]
amd64	0.1.26-4	24.3 kB	62.0 kB	[list of files]
arm64	0.1.26-4	23.1 kB	85.0 kB	[list of files]
armel	0.1.26-4	22.8 kB	85.0 kB	[list of files]
armhf	0.1.26-4	22.8 kB	85.0 kB	[list of files]
hppa (unofficial port)	0.1.26-4	25.2 kB	62.0 kB	[list of files]
i386	0.1.26-4	25.1 kB	61.0 kB	[list of files]
ia64 (unofficial port)	0.1.26-4	29.6 kB	93.0 kB	[list of files]
m68k (unofficial port)	0.1.26-4	24.3 kB	61.0 kB	[list of files]
mips64el	0.1.26-4	25.9 kB	89.0 kB	[list of files]
ppc64 (unofficial port)	0.1.26-4	25.7 kB	86.0 kB	[list of files]
ppc64el	0.1.26-4	26.5 kB	86.0 kB	[list of files]
riscv64	0.1.26-4+b1	24.2 kB	55.0 kB	[list of files]
s390x	0.1.26-4	22.6 kB	57.0 kB	[list of files]
sh4 (unofficial port)	0.1.26-4	26.9 kB	85.0 kB	[list of files]
sparc64 (unofficial port)	0.1.26-4	23.2 kB	1,047.0 kB	[list of files]
x32 (unofficial port)	0.1.26-4	24.3 kB	57.0 kB	[list of files]