Package: probalign (1.4-10 and others)

[ Source: probalign  ]

multiple sequence alignment using partition function posterior probabilities

Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% higher than the other three methods when standard deviation of length is at least 300 and 400.

Other Packages Related to probalign

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k, ppc64, ppc64el, sh4]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC támogató programkönyvtár

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC támogató programkönyvtár

• dep: libstdc++6 (>= 11) [not riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download probalign

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.4-10	69.0 kB	220.0 kB	[list of files]
amd64	1.4-10	68.9 kB	175.0 kB	[list of files]
arm64	1.4-10	64.6 kB	219.0 kB	[list of files]
armel	1.4-10	55.1 kB	142.0 kB	[list of files]
armhf	1.4-10	53.9 kB	114.0 kB	[list of files]
hppa (unofficial port)	1.4-10	66.9 kB	156.0 kB	[list of files]
i386	1.4-10	61.4 kB	158.0 kB	[list of files]
ia64 (unofficial port)	1.4-10	97.8 kB	292.0 kB	[list of files]
m68k (unofficial port)	1.4-10	60.2 kB	162.0 kB	[list of files]
mips64el	1.4-10	65.4 kB	223.0 kB	[list of files]
ppc64 (unofficial port)	1.4-10	70.0 kB	219.0 kB	[list of files]
ppc64el	1.4-10	78.4 kB	219.0 kB	[list of files]
riscv64	1.4-10+b1	67.4 kB	132.0 kB	[list of files]
s390x	1.4-10	56.7 kB	171.0 kB	[list of files]
sh4 (unofficial port)	1.4-10	72.5 kB	155.0 kB	[list of files]
sparc64 (unofficial port)	1.4-10	60.5 kB	1,054.0 kB	[list of files]
x32 (unofficial port)	1.4-10	70.0 kB	170.0 kB	[list of files]