Package: poa (2.0+20060928-9)

[ Source: poa  ]

Partial Order Alignment for multiple sequence alignment

POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to poa

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• sug: blast2

  Package not available

• enh: t-coffee

  Multiple Sequence Alignment

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Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	49.7 kB	182.0 kB	[list of files]
amd64	52.0 kB	142.0 kB	[list of files]
arm64	47.7 kB	181.0 kB	[list of files]
armel	48.8 kB	137.0 kB	[list of files]
armhf	46.9 kB	109.0 kB	[list of files]
hppa (unofficial port)	48.3 kB	130.0 kB	[list of files]
i386	52.5 kB	149.0 kB	[list of files]
ia64 (unofficial port)	61.5 kB	204.0 kB	[list of files]
m68k (unofficial port)	44.6 kB	125.0 kB	[list of files]
mips64el	48.7 kB	186.0 kB	[list of files]
ppc64 (unofficial port)	55.0 kB	182.0 kB	[list of files]
ppc64el	56.5 kB	182.0 kB	[list of files]
riscv64	51.9 kB	122.0 kB	[list of files]
s390x	54.6 kB	145.0 kB	[list of files]
sh4 (unofficial port)	54.4 kB	181.0 kB	[list of files]
sparc64 (unofficial port)	46.5 kB	1,079.0 kB	[list of files]
x32 (unofficial port)	51.1 kB	129.0 kB	[list of files]