Package: nanolyse (1.2.0-4 and others)

[ Source: nanolyse  ]

remove lambda phage reads from a fastq file

NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome.

Other Packages Related to nanolyse

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-mappy

  Python3 interface minimap2

Download nanolyse

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]
amd64	1.2.0-4	24.7 kB	66.0 kB	[list of files]
arm64	1.2.0-4	24.7 kB	66.0 kB	[list of files]
armel	1.2.0-4	24.7 kB	66.0 kB	[list of files]
armhf	1.2.0-4	24.7 kB	66.0 kB	[list of files]
hppa (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]
i386	1.2.0-4	24.7 kB	66.0 kB	[list of files]
ia64 (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]
m68k (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]
mips64el	1.2.0-4	24.7 kB	66.0 kB	[list of files]
ppc64 (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]
ppc64el	1.2.0-4	24.7 kB	66.0 kB	[list of files]
riscv64	1.2.0-4+b1	25.0 kB	67.0 kB	[list of files]
s390x	1.2.0-4	24.7 kB	66.0 kB	[list of files]
sh4 (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]
sparc64 (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]
x32 (unofficial port)	1.2.0-4	24.7 kB	66.0 kB	[list of files]