Package: minimap2 (2.27+dfsg-1 and others)
Links for minimap2
Debian Resources:
Download Source Package minimap2:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.
Other Packages Related to minimap2
|
|
|
|
-
- dep: libc6 (>= 2.29) [x32]
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.34) [not alpha, ia64, sh4, x32]
- dep: libc6 (>= 2.37) [sh4]
-
- dep: libc6.1 (>= 2.34) [alpha]
- GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
-
- dep: zlib1g (>= 1:1.1.4) [not armel, armhf, m68k]
- tömörítő könyvtár - futásidejű
- dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, m68k]
Download minimap2
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 2.26+dfsg-1 | 404.5 kB | 575.0 kB | [list of files] |
amd64 | 2.27+dfsg-1 | 379.4 kB | 507.0 kB | [list of files] |
arm64 | 2.27+dfsg-1 | 370.6 kB | 511.0 kB | [list of files] |
armel | 2.27+dfsg-1 | 388.8 kB | 550.0 kB | [list of files] |
armhf | 2.27+dfsg-1 | 389.8 kB | 482.0 kB | [list of files] |
hppa (unofficial port) | 2.24+dfsg-3+b2 | 409.8 kB | 575.0 kB | [list of files] |
i386 | 2.27+dfsg-1 | 386.2 kB | 530.0 kB | [list of files] |
ia64 (unofficial port) | 2.24+dfsg-3+b1 | 441.2 kB | 755.0 kB | [list of files] |
m68k (unofficial port) | 2.27+dfsg-1 | 387.3 kB | 558.0 kB | [list of files] |
mips64el | 2.27+dfsg-1 | 403.8 kB | 583.0 kB | [list of files] |
ppc64 (unofficial port) | 2.27+dfsg-1 | 409.7 kB | 639.0 kB | [list of files] |
ppc64el | 2.27+dfsg-1 | 390.6 kB | 575.0 kB | [list of files] |
riscv64 | 2.27+dfsg-1 | 410.4 kB | 519.0 kB | [list of files] |
s390x | 2.27+dfsg-1 | 410.4 kB | 591.0 kB | [list of files] |
sh4 (unofficial port) | 2.24+dfsg-3+b2 | 424.6 kB | 574.0 kB | [list of files] |
sparc64 (unofficial port) | 2.27+dfsg-1 | 392.5 kB | 1,345.0 kB | [list of files] |
x32 (unofficial port) | 2.24+dfsg-2+b1 | 374.5 kB | 493.0 kB | [list of files] |