Package: daligner (1.0+git20240119.335105d-2)

[ Source: daligner  ]

local alignment discovery between long nucleotide sequencing reads

These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.

Tags: Implemented in: C, User Interface: Command Line, Role: Program

Other Packages Related to daligner

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• sug: dascrubber

  alignment-based scrubbing pipeline for DNA sequencing reads

• sug: dazzdb

  manage nucleotide sequencing read data

Download daligner

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	213.8 kB	1,994.0 kB	[list of files]
amd64	235.7 kB	1,626.0 kB	[list of files]
arm64	206.7 kB	1,928.0 kB	[list of files]
armel	198.1 kB	1,520.0 kB	[list of files]
armhf	198.1 kB	1,128.0 kB	[list of files]
hppa (unofficial port)	213.4 kB	1,554.0 kB	[list of files]
i386	227.8 kB	1,756.0 kB	[list of files]
ia64 (unofficial port)	252.4 kB	2,877.0 kB	[list of files]
m68k (unofficial port)	201.2 kB	1,472.0 kB	[list of files]
mips64el	195.6 kB	2,039.0 kB	[list of files]
ppc64 (unofficial port)	220.0 kB	2,250.0 kB	[list of files]
ppc64el	231.2 kB	2,186.0 kB	[list of files]
riscv64	225.9 kB	1,238.0 kB	[list of files]
s390x	240.1 kB	1,788.0 kB	[list of files]
sh4 (unofficial port)	228.8 kB	1,664.0 kB	[list of files]
sparc64 (unofficial port)	188.1 kB	10,454.0 kB	[list of files]
x32 (unofficial port)	234.4 kB	1,556.0 kB	[list of files]