Package: clustalx (2.1+lgpl-9 and others)

[ Source: clustalx  ]

Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, User Interface: Graphical User Interface, interface::x11, role::program, Scope: Utility, Interface Toolkit: Lesstif/Motif, uitoolkit::qt, use::analysing, Purpose: Comparing, use::viewing, works-with-format::plaintext, Works with: Need an extra tag, X Window System: Application

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Download clustalx

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.1+lgpl-9+b1	405.8 kB	1,659.0 kB	[list of files]
amd64	2.1+lgpl-9+b1	445.0 kB	1,427.0 kB	[list of files]
arm64	2.1+lgpl-9+b1	385.0 kB	1,334.0 kB	[list of files]
armel	2.1+lgpl-9+b1	378.0 kB	1,262.0 kB	[list of files]
armhf	2.1+lgpl-9+b1	390.7 kB	962.0 kB	[list of files]
hppa (unofficial port)	2.1+lgpl-9+b1	419.9 kB	1,461.0 kB	[list of files]
i386	2.1+lgpl-9+b1	474.3 kB	1,470.0 kB	[list of files]
ia64 (unofficial port)	2.1+lgpl-9+b1	501.1 kB	2,574.0 kB	[list of files]
m68k (unofficial port)	2.1+lgpl-9	416.1 kB	1,369.0 kB	[list of files]
mips64el	2.1+lgpl-9+b1	395.1 kB	1,726.0 kB	[list of files]
ppc64 (unofficial port)	2.1+lgpl-9+b1	423.6 kB	1,782.0 kB	[list of files]
ppc64el	2.1+lgpl-9+b1	428.8 kB	1,654.0 kB	[list of files]
riscv64	2.1+lgpl-9+b2	433.5 kB	1,130.0 kB	[list of files]
s390x	2.1+lgpl-9+b1	446.3 kB	1,470.0 kB	[list of files]
sh4 (unofficial port)	2.1+lgpl-9+b1	506.1 kB	1,336.0 kB	[list of files]
sparc64 (unofficial port)	2.1+lgpl-9+b1	356.6 kB	2,179.0 kB	[list of files]
x32 (unofficial port)	2.1+lgpl-9	427.3 kB	1,245.0 kB	[list of files]