Package: bitseq (0.7.5+dfsg-6 and others)

[ Source: bitseq  ]

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Other Packages Related to bitseq

• dep: libc6 (>= 2.29) [not alpha, riscv64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, i386, s390x, x32]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4) [alpha, sh4, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, mips64el, riscv64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC támogató programkönyvtár

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC támogató programkönyvtár

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11) [riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 11.2.0-3) [alpha]

  dep: libstdc++6 (>= 5.2) [not alpha, riscv64]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: zlib1g (>= 1:1.2.3.3)

  tömörítő könyvtár - futásidejű

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Download bitseq

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.7.5+dfsg-6	363.8 kB	2,250.0 kB	[list of files]
amd64	0.7.5+dfsg-6	337.2 kB	1,927.0 kB	[list of files]
arm64	0.7.5+dfsg-6	298.0 kB	1,691.0 kB	[list of files]
armel	0.7.5+dfsg-6	282.4 kB	1,606.0 kB	[list of files]
armhf	0.7.5+dfsg-6	286.8 kB	1,158.0 kB	[list of files]
hppa (unofficial port)	0.7.5+dfsg-6	311.3 kB	1,720.0 kB	[list of files]
i386	0.7.5+dfsg-6	362.5 kB	2,022.0 kB	[list of files]
m68k (unofficial port)	0.7.5+dfsg-6	317.5 kB	1,730.0 kB	[list of files]
mips64el	0.7.5+dfsg-6	320.9 kB	2,167.0 kB	[list of files]
ppc64 (unofficial port)	0.7.5+dfsg-6	344.7 kB	2,855.0 kB	[list of files]
ppc64el	0.7.5+dfsg-6	343.5 kB	2,471.0 kB	[list of files]
riscv64	0.7.5+dfsg-6+b2	335.9 kB	1,440.0 kB	[list of files]
s390x	0.7.5+dfsg-6	297.6 kB	1,955.0 kB	[list of files]
sh4 (unofficial port)	0.7.5+dfsg-6	360.8 kB	1,651.0 kB	[list of files]
sparc64 (unofficial port)	0.7.5+dfsg-6	289.1 kB	1,793.0 kB	[list of files]
x32 (unofficial port)	0.7.5+dfsg-6	338.6 kB	1,766.0 kB	[list of files]