Package: mapdamage (2.2.3+dfsg-2)

[ Source: mapdamage  ]

tracking and quantifying damage patterns in ancient DNA sequences

MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.

Other Packages Related to mapdamage

• dep: libc6 (>= 2.14) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [armhf, i386, m68k]

  dep: libc6 (>= 2.42) [loong64, sh4]

• dep: libc6.1 (>= 2.3) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  or libblas-dev

  Basic Linear Algebra Subroutines 3, static library

  or libatlas-base-dev

  Automatically Tuned Linear Algebra Software, generic static

  or libblas.so

  virtual package provided by libatlas-base-dev, libblas-dev, libblis-openmp-dev, libblis-pthread-dev, libblis-serial-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  or liblapack-dev

  Library of linear algebra routines 3 - static version

  or libatlas-base-dev

  Automatically Tuned Linear Algebra Software, generic static

  or liblapack.so

  virtual package provided by libatlas-base-dev, liblapack-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.15)

  dep: python3 (>= 3.13~)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-gam

  Generalized Additive Models for R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-inline

  GNU R package to inline C, C++, Fortran functions from R

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppgsl

  GNU R package for integration with the GNU GSL

• dep: seqtk

  Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

• dep: zlib1g (>= 1:1.2.3.3) [not loong64]

  tömörítő könyvtár - futásidejű

  dep: zlib1g (>= 1:1.2.3.4) [loong64]

Download mapdamage

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	49.0 kB	346.0 kB	[list of files]
amd64	49.0 kB	242.0 kB	[list of files]
arm64	48.7 kB	346.0 kB	[list of files]
armhf	48.5 kB	344.0 kB	[list of files]
i386	48.9 kB	240.0 kB	[list of files]
loong64	49.2 kB	346.0 kB	[list of files]
m68k (unofficial port)	48.3 kB	232.0 kB	[list of files]
ppc64el	49.4 kB	346.0 kB	[list of files]
riscv64	48.7 kB	234.0 kB	[list of files]
sh4 (unofficial port)	48.7 kB	344.0 kB	[list of files]
x32 (unofficial port)	48.6 kB	240.0 kB	[list of files]