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[ Source: htscodecs  ]

Package: libhtscodecs2 (1.1.1-3 and others)

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Custom compression for CRAM and others

This library implements the custom CRAM codecs used for "EXTERNAL" block types. These consist of two variants of the rANS codec (8-bit and 16-bit renormalisation, with run-length encoding and bit-packing also supported in the latter), a dynamic arithmetic coder, and custom codecs for name/ID compression and quality score compression derived from fqzcomp.

They come with small command line test tools to act as both compression exploration programs and as part of the test harness.

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Download libhtscodecs2

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.1.1-3+b1 67.7 kB156.0 kB [list of files]
amd64 1.1.1-3+b1 48.9 kB119.0 kB [list of files]
arm64 1.1.1-3+b1 48.8 kB115.0 kB [list of files]
armel 1.1.1-3+b1 50.1 kB123.0 kB [list of files]
armhf 1.1.1-3+b1 48.8 kB91.0 kB [list of files]
hppa (unofficial port) 1.1.1-3+b1 58.1 kB136.0 kB [list of files]
i386 1.1.1-3+b1 53.6 kB131.0 kB [list of files]
ia64 (unofficial port) 1.1.1-3+b1 77.0 kB248.0 kB [list of files]
m68k (unofficial port) 1.1.1-3+b1 48.7 kB115.0 kB [list of files]
mips64el 1.1.1-3+b1 55.3 kB134.0 kB [list of files]
mipsel 1.1.1-3 56.2 kB133.0 kB [list of files]
ppc64 (unofficial port) 1.1.1-3+b1 61.5 kB212.0 kB [list of files]
ppc64el 1.1.1-3+b1 61.2 kB211.0 kB [list of files]
riscv64 (unofficial port) 1.1.1-3+b1 57.4 kB104.0 kB [list of files]
s390x 1.1.1-3+b1 53.7 kB139.0 kB [list of files]
sh4 (unofficial port) 1.1.1-3+b1 62.4 kB107.0 kB [list of files]
sparc64 (unofficial port) 1.1.1-3+b1 52.8 kB141.0 kB [list of files]
x32 (unofficial port) 1.1.1-3+b1 47.8 kB111.0 kB [list of files]