Package: libjellyfish-2.0-dev (2.3.1-3 and others)

[ Source: jellyfish  ]

count k-mers in DNA sequences (development files of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the development files (static library and header files)

Tags: Software Development: Függvény-könyvtárak, Role: Development Library

Other Packages Related to libjellyfish-2.0-dev

• dep: libjellyfish-2.0-2 (= 2.3.0-12) [ia64]

  count k-mers in DNA sequences (dynamic library of jellyfish)

  dep: libjellyfish-2.0-2 (= 2.3.1-2+b1) [hppa]

  dep: libjellyfish-2.0-2 (= 2.3.1-3+b3) [amd64, arm64]

  dep: libjellyfish-2.0-2 (= 2.3.1-3+b4) [mips64el, ppc64el, riscv64]

Download libjellyfish-2.0-dev

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	2.3.1-3+b3	134.8 kB	691.0 kB	[list of files]
arm64	2.3.1-3+b3	132.8 kB	694.0 kB	[list of files]
hppa (unofficial port)	2.3.1-2+b1	134.3 kB	627.0 kB	[list of files]
ia64 (unofficial port)	2.3.0-12	150.5 kB	825.0 kB	[list of files]
mips64el	2.3.1-3+b4	140.4 kB	777.0 kB	[list of files]
ppc64el	2.3.1-3+b4	140.9 kB	725.0 kB	[list of files]
riscv64	2.3.1-3+b4	265.7 kB	2,255.0 kB	[list of files]