Package: r-bioc-gviz (1.46.1+dfsg-1)

[ Source: r-bioc-gviz  ]

Plotting data and annotation information along genomic coordinates

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Other Packages Related to r-bioc-gviz

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.18

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.27.5)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase (>= 2.15.3)

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• dep: r-bioc-biocgenerics (>= 0.11.3)

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• dep: r-bioc-biomart (>= 2.11.0)

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• dep: r-bioc-biostrings (>= 2.33.11)

  GNU R string objects representing biological sequences

• dep: r-bioc-biovizbase (>= 1.13.8)

  GNU R basic graphic utilities for visualization of genomic data

• dep: r-bioc-bsgenome (>= 1.33.1)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-ensembldb (>= 2.11.3)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.1.16)

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• dep: r-bioc-genomicfeatures (>= 1.17.22)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.17.20)

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• dep: r-bioc-iranges (>= 1.99.18)

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• dep: r-bioc-rsamtools (>= 1.17.28)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-rtracklayer (>= 1.25.13)

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• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.5.7)

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• dep: r-cran-digest (>= 0.6.8)

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• dep: r-cran-lattice

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• dep: r-cran-latticeextra (>= 0.6-26)

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• dep: r-cran-matrixstats (>= 0.8.14)

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• dep: r-cran-rcolorbrewer

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• sug: r-bioc-biocstyle

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-testthat

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• sug: r-cran-xml2

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