Package: fastqc (0.12.1+dfsg-3)

Links for fastqc

Debian Resources:

Download Source Package fastqc:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Andreas Tille (QA Page)
Olivier Sallou (QA Page)

External Resources:

Homepage [www.bioinformatics.babraham.ac.uk]

Similar packages:

quality control for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are

 * Import of data from BAM, SAM or FastQ files (any variant)
 * Providing a quick overview to tell you in which areas there may
   be problems
 * Summary graphs and tables to quickly assess your data
 * Export of results to an HTML based permanent report
 * Offline operation to allow automated generation of reports without
   running the interactive application

Tags: User Interface: Graphical User Interface, X Window System, Role: Program

Other Packages Related to fastqc

depends

recommends

suggests

enhances

dep: default-jre

Standard Java or Java compatible Runtime
dep: libcommons-math3-java

Java lightweight mathematics and statistics components
dep: libfindbin-libs-perl

Perl module to use a relative path for lib directories
dep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
dep: libjbzip2-java

bzip2 compression/decompression library
dep: libsis-jhdf5-java

easy-to-use HDF library for Java

Download fastqc

Download for all available architectures
Architecture	Package Size	Installed Size	Files
all	390.0 kB	574.0 kB	[list of files]