Software Packages in "experimental", Subsection science

ants (2.2.0-1+b2)
advanced normalization tools for brain and image analysis
bali-phy (4.0~beta2+dfsg-1)
Bayesian Inference of Alignment and Phylogeny
belvu (4.44.1+dfsg-7.1~exp1)
multiple sequence alignment viewer and phylogenetic tool
blixem (4.44.1+dfsg-7.1~exp1)
interactive browser of sequence alignments
bwa (0.7.17-8~0exp)
Burrows-Wheeler Aligner
casacore-tools (3.5.0-4.1~exp1)
Tools built with CASA
cgns-convert (4.2.0-1~exp1 [alpha, amd64, arm64, armel, armhf, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.1.2-1~exp1 [hppa, i386])
CFD General Notation System - Conversion tools
cnrun-tools (2.1.0-3)
NeuroML-capable neuronal network simulator (tools)
cnvkit (0.9.10-2~0exp)
Copy number variant detection from targeted DNA sequencing
code-saturne (7.0.2+repack-1~exp1)
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (7.0.2+repack-1~exp1)
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (7.0.2+repack-1~exp1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-doc (7.0.2+repack-1~exp1)
General purpose Computational Fluid Dynamics (CFD) software - Documentation
code-saturne-include (7.0.2+repack-1~exp1)
General purpose Computational Fluid Dynamics (CFD) software - includes
coinor-libbonmin4t64 (1.8.9-1.1~exp3)
COIN-OR mixed integer programming
critterding (1.0-beta14+dfsg-2+b3 [amd64], 1.0-beta14+dfsg-2+b2 [arm64, armel, armhf, i386, ppc64el, s390x], 1.0-beta14+dfsg-2+b1 [mips64el, ppc64, x32], 1.0-beta14+dfsg-2 [alpha, hppa, m68k, sparc64])
Evolving Artificial Life
critterding-common (1.0-beta14+dfsg-2+b1)
Evolving Artificial Life - architecture-independent files
dcmtk (3.6.8-3 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.6.8-2 [hppa], 3.6.8~git20221024.b8950f9-3 [ia64])
OFFIS DICOM toolkit command line utilities
dcmtk-data (3.6.8-3)
OFFIS DICOM toolkit data files
dotter (4.44.1+dfsg-7.1~exp1)
detailed comparison of two genomic sequences
dx (1:4.4.4-15.1~exp1)
OpenDX (IBM Visualization Data Explorer) - main package
ectrans-utils (1.2.0-1) [debports]
Spherical Harmonics Transforms library - utilities
examl (3.0.22-4~0exp) [debports]
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
fasta3 (36.3.8i.14-Nov-2020-2~0exp0simde)
tools for searching collections of biological sequences
fiat-utils (1.2.0-4~exp1)
Fortran IFS and Arpege Toolkit - utilities
fml-asm (0.1+git20190320.b499514-2~0exp)
tool for assembling Illumina short reads in small regions
freebayes (1.3.7-1~exp+b1 [amd64, arm64, ia64, m68k, mips64el, ppc64, ppc64el, sh4], 1.3.7-1~exp [armel, armhf, i386, riscv64, s390x, sparc64])
Bayesian haplotype-based polymorphism discovery and genotyping
gazebo (11.10.2+dfsg-1+b1)
Open Source Robotics Simulator - Binaries
gazebo-common (11.10.2+dfsg-1)
Open Source Robotics Simulator - Shared files
gazebo-plugin-base (11.10.2+dfsg-1+b1)
Open Source Robotics Simulator - base plug-ins
gdal-bin (3.8.4+dfsg-2~exp1)
Geospatial Data Abstraction Library - Utility programs
gdal-data (3.8.4+dfsg-2~exp1)
Geospatial Data Abstraction Library - Data files
gdal-plugins (3.8.4+dfsg-2~exp1)
Geospatial Data Abstraction Library - Plugins
gerris (20131206+dfsg-19.1~exp2)
Fluid Flow Solver
gfsview-batch (20121130+dfsg-8.1~exp1)
batch-version of viewer for Gerris simulation files
gmt (6.5.0+dfsg-2~exp1)
Generic Mapping Tools
gmt-common (6.5.0+dfsg-2~exp1)
Generic Mapping Tools - Architecture-independent files
grass (8.3.2-1~exp1)
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (8.3.2-1~exp1 [amd64, arm64, i386, mips64el, ppc64el, s390x], 8.3.2~rc1-1~exp1 [armel, armhf, m68k, riscv64, sh4])
GRASS GIS core components
grass-gui (8.3.2-1~exp1 [amd64, arm64, i386, mips64el, ppc64el, s390x], 8.3.2~rc1-1~exp1 [armel, armhf, m68k, riscv64, sh4])
GRASS GIS graphical user interfaces
hdf5-filter-plugin-zfp-serial (1.1.0+git20230428-0+exp2)
Compression plugin for the HDF5 library using ZFP compression
hdf5-helpers (1.14.3+repack1-1~exp2 [amd64, arm64, i386, ppc64, ppc64el, x32], 1.12.2+repack-1~exp1 [alpha, armel, armhf, hppa, ia64, m68k, mips64el, riscv64, s390x, sh4, sparc64])
HDF5 - Helper tools
hdf5-tools (1.14.3+repack1-1~exp2 [amd64, arm64, i386, ppc64, ppc64el, x32], 1.12.2+repack-1~exp1 [alpha, armel, armhf, hppa, ia64, m68k, mips64el, riscv64, s390x, sh4, sparc64])
HDF5 - Runtime tools
heudiconv (0.13.1-1)
DICOM converter with support for structure heuristics
hisat2 (2.2.1-5~0exp)
graph-based alignment of short nucleotide reads to many genomes
jellyfish (2.3.1-2.1~exp1)
count k-mers in DNA sequences
jellyfish-examples (2.3.1-2.1~exp1)
count k-mers in DNA sequences (examples for testing)
khmer (3.0.0~a3+dfsg-9~0exp)
in-memory DNA sequence kmer counting, filtering & graph traversal
khmer-common (3.0.0~a3+dfsg-9~0exp)
common files for the khmer project tools
kstars (5:3.6.7-1)
desktop planetarium, observation planning and telescope control
kstars-data (5:3.6.7-1)
data files for KStars desktop planetarium
lammps (20240207+dfsg-1.1~exp1)
Molecular Dynamics Simulator
libghemical-data (3.0.0-4.4~exp1)
Molecular Modelling Library (data files)
libhdf5-jni (1.14.3+repack1-1~exp2 [amd64, arm64, i386, ppc64, ppc64el, x32], 1.12.2+repack-1~exp1 [alpha, armel, armhf, ia64, m68k, mips64el, riscv64, s390x, sh4, sparc64])
native library used by libhdf5-java
liblammps-dev (20240207+dfsg-1.1~exp1)
Molecular Dynamics Simulator (dev files)
liblammps0t64 (20240207+dfsg-1.1~exp1)
Molecular Dynamics Simulator (shared library)
liblinear-tools (2.43+dfsg-1)
Standalone applications for LIBLINEAR
libncarg-bin (6.6.2.dfsg.1-4.1~exp1)
NCAR command-language library - development tools
libncarg-data (6.6.2.dfsg.1-4.1~exp1)
NCAR command-language library - Data
libpluto-sat-code-dev (0.0~git20180301-1)
development files for prediction of orbits of earth satellites
libqgis-customwidgets (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS custom widgets for Qt Designer
libsilo-bin (4.11-3.1~exp1)
Utilities to manipulate libsilo files
libtorch-test (2.1.2+dfsg-1)
Tensors and Dynamic neural networks in Python (Test Binaries)
libxy-bin (1.6-3.1~exp1)
xylib - utilities
libyade (2024.00a~git~ga581-1~exp2)
Platform for discrete element modeling. Libraries
liggghts (3.8.0+repack1-9.1~exp1)
Open Source DEM Particle Simulation Software.
lttoolbox-dev (3.7.1-2) [debports]
Development tools and library for lttoolbox
lua-cnrun (2.1.0-3)
NeuroML-capable neuronal network simulator (Lua package)
m2m-aligner (1.2-2)
many-to-many alignments for string transduction
mandelbrot-solver (3.2.1-10.1~exp1)
Solver for Mandelbrot polynomials based on MPSolve
mia-doctools (2.4.7-13.1~exp1)
Helper scripts for run-time document creation
mia-tools (2.4.7-13.1~exp1)
Command line tools for gray scale image processing
minimap2 (2.24+dfsg-4~0exp+b2 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64el, s390x], 2.24+dfsg-4~0exp+b1 [ia64, m68k, riscv64, sh4])
versatile pairwise aligner for genomic and spliced nucleotide sequences
mmb (4.0.0+dfsg-3.1~exp1)
model the structure and dynamics of macromolecules
mmb-common (4.0.0+dfsg-3.1~exp1)
model the structure and dynamics of macromolecules (common files)
mpsolve (3.2.1-10.1~exp1)
Multiprecision polynomial solver (command line version)
mrpt-apps (1:2.12.0+ds-1 [amd64, arm64, i386, ppc64, ppc64el], 1:2.11.10+ds-1.1~exp1 [armel, armhf, mips64el, riscv64, s390x])
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common (1:2.12.0+ds-1)
Mobile Robot Programming Toolkit - Example datasets and files
music-bin (1.2.1-0.3~exp1)
Multi-Simulation Coordinator for MPI -- Utilities
ncbi-cn3d (3.0.20170106+dfsg2-1~exp2)
3-dimensional viewer for biological molecules
ncbi-rrna-data (6.1.20170106+dfsg2-1~exp2)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin (6.1.20170106+dfsg2-1~exp2)
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20170106+dfsg2-1~exp2)
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.6.2.dfsg.1-4.1~exp1)
NCAR Command Language and NCAR graphics
ngmlr (0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde)
CoNvex Gap-cost alignMents for Long Reads
occt-draw (7.7.1+dfsg1-1~exp2)
Open CASCADE Technology command interpreter and graphical test system
octomap-tools (1.9.7+dfsg-3.1~exp1)
Tools for 3D occupancy grid mapping
octovis (1.9.7+dfsg-3.1~exp1)
Visualization tool for OctoMap
odil (0.12.2-4.1~exp1)
C++11 library for the DICOM standard (application)
ompl-plannerarena (1.5.2+ds1-1.1~exp1)
Open Motion Planning Library (OMPL) plannerarena
open3d-gui (0.18.0+ds-3.1~exp1)
Transitional dummy package for open3d-viewer
open3d-tools (0.18.0+ds-3.1~exp1)
Library for 3D data processing - tools
open3d-viewer (0.18.0+ds-3.1~exp1)
Library for 3D data processing - viewer GUI
open3d-viewer-data (0.18.0+ds-3.1~exp1)
Library for 3D data processing - viewer GUI resources
openstructure (2.6.1-1~exp [amd64, mips64el], 2.6.0~rc-1~exp [sh4])
Open-Source Computational Structural Biology Framework
openturns-common (1.22-1)
generic tool to treat and quantify uncertainties (common files)
otf2-tools (3.0.3-3.1~exp1)
Open Trace Format support library - tools
ovito (3.9.4~ds-2)
Scientific data visualization and analysis software for atomistic and molecular
phonetisaurus (0.7.8-6+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 0.7.8-6 [sh4])
Grapheme to Phoneme conversion tool
pktools (2.6.7.6+ds-5~exp1)
GDAL add-on tools to perform useful raster processing
plink2 (2.00~a3.5-220809+dfsg-2~0exp0simde) [debports]
whole-genome association analysis toolset
pluto-find-orb (0.0~git20180227-5)
orbit assessment from asteroid images
pluto-sat-code (0.0~git20180301-1)
prediction of orbits of earth satellites
q2-phylogeny (2022.11.1-1)
QIIME 2 plugin for phylogeny
qgis (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
Geographic Information System (GIS)
qgis-api-doc (3.34.4+dfsg-2~exp1)
QGIS API documentation
qgis-common (3.34.4+dfsg-2~exp1)
QGIS - architecture-independent data
qgis-plugin-grass (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
GRASS plugin for QGIS
qgis-plugin-grass-common (3.34.4+dfsg-2~exp1)
GRASS plugin for QGIS - architecture-independent data
qgis-provider-grass (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
GRASS provider for QGIS
qgis-providers (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
collection of data providers to QGIS
qgis-providers-common (3.34.4+dfsg-2~exp1)
collection of data providers to QGIS - architecture-independent files
qgis-server (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services
qgis-server-bin (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (executables)
qgis-server-common (3.34.4+dfsg-2~exp1)
QGIS server providing various OGC services (data)
qgis-server-dummy (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (dummy)
qgis-server-landingpage (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (landing page)
qgis-server-wcs (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (WCS)
qgis-server-wfs (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (WFS)
qgis-server-wfs3 (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (WFS 3)
qgis-server-wms (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (WMS)
qgis-server-wmts (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
QGIS server providing various OGC services (WMTS)
rapmap (0.15.0+dfsg-4~0exp0simde)
rapid sensitive and accurate DNA read mapping via quasi-mapping
rapmap-dev (0.15.0+dfsg-4~0exp0simde)
rapmap - rapid sensitive and accurate DNA read mapping (some headers)
rapmap-example-data (0.15.0+dfsg-4~0exp0simde)
example data for rapmap - rapid sensitive and accurate DNA read mapping
sasview (5.0.5-2)
Small Angle Scattering Analysis suite
scrappie (1.4.2-9~0exp0simde)
basecaller for Nanopore sequencer
sequitur-g2p (0+r1668.r3-1)
Grapheme to Phoneme conversion tool
spoa (4.0.8-2~0exp0simde)
SIMD partial order alignment tool
ssw-align (1.2.5-1)
Smith-Waterman aligner based on libssw
staden (2.0.0+b11-5~rc1) [debports]
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
starpu-examples (1.4.3+dfsg-2.1~exp1)
Task scheduler for heterogeneous multicore machines - exs
sump-logicanalyzer (0.8-1)
GUI controlling multiple logic analysers
tinysvm (0.09+dfsg-2)
SVM trainer and classifier toolkit
vowpal-wabbit (8.6.1.dfsg1-1.1~exp1) [debports]
fast and scalable online machine learning algorithm
xcas (1.9.0.69+dfsg2-1.1~exp1)
Computer Algebra System - console and graphical calculator
xmpsolve (3.2.1-10.1~exp1)
Multiprecision polynomial solver (graphical version)
yade (2024.00a~git~ga581-1~exp2)
Platform for discrete element modeling
yamcha (0.33-2)
general purpose chunker annotator
yorick-optimpack (1.4.0~pre1+dfsg-1~exp0)
optimization of large scale problems for the Yorick language