Software Packages in "experimental", Subsection science
- ants (2.2.0-1+b2)
- advanced normalization tools for brain and image analysis
- bali-phy (4.0~beta2+dfsg-1)
- Bayesian Inference of Alignment and Phylogeny
- belvu (4.44.1+dfsg-7.1~exp1)
- multiple sequence alignment viewer and phylogenetic tool
- blixem (4.44.1+dfsg-7.1~exp1)
- interactive browser of sequence alignments
- bwa (0.7.17-8~0exp)
- Burrows-Wheeler Aligner
- casacore-tools (3.5.0-4.1~exp1)
- Tools built with CASA
- cgns-convert (4.2.0-1~exp1 [alpha, amd64, arm64, armel, armhf, ia64, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 4.1.2-1~exp1 [hppa, i386])
- CFD General Notation System - Conversion tools
- cnrun-tools (2.1.0-3)
- NeuroML-capable neuronal network simulator (tools)
- cnvkit (0.9.10-2~0exp)
- Copy number variant detection from targeted DNA sequencing
- code-saturne (7.0.2+repack-1~exp1)
- General purpose Computational Fluid Dynamics (CFD) software
- code-saturne-bin (7.0.2+repack-1~exp1)
- General purpose Computational Fluid Dynamics (CFD) software - binaries
- code-saturne-data (7.0.2+repack-1~exp1)
- General purpose Computational Fluid Dynamics (CFD) software - data
- code-saturne-doc (7.0.2+repack-1~exp1)
- General purpose Computational Fluid Dynamics (CFD) software - Documentation
- code-saturne-include (7.0.2+repack-1~exp1)
- General purpose Computational Fluid Dynamics (CFD) software - includes
- coinor-libbonmin4t64 (1.8.9-1.1~exp3)
- COIN-OR mixed integer programming
- critterding (1.0-beta14+dfsg-2+b3 [amd64], 1.0-beta14+dfsg-2+b2 [arm64, armel, armhf, i386, ppc64el, s390x], 1.0-beta14+dfsg-2+b1 [mips64el, ppc64, x32], 1.0-beta14+dfsg-2 [alpha, hppa, m68k, sparc64])
- Evolving Artificial Life
- critterding-common (1.0-beta14+dfsg-2+b1)
- Evolving Artificial Life - architecture-independent files
- dcmtk (3.6.8-3 [alpha, amd64, arm64, armel, armhf, i386, m68k, mips64el, ppc64, ppc64el, riscv64, s390x, sh4, sparc64, x32], 3.6.8-2 [hppa], 3.6.8~git20221024.b8950f9-3 [ia64])
- OFFIS DICOM toolkit command line utilities
- dcmtk-data (3.6.8-3)
- OFFIS DICOM toolkit data files
- dotter (4.44.1+dfsg-7.1~exp1)
- detailed comparison of two genomic sequences
- dx (1:4.4.4-15.1~exp1)
- OpenDX (IBM Visualization Data Explorer) - main package
- ectrans-utils (1.2.0-1) [debports]
- Spherical Harmonics Transforms library - utilities
- examl (3.0.22-4~0exp) [debports]
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
- fasta3 (36.3.8i.14-Nov-2020-2~0exp0simde)
- tools for searching collections of biological sequences
- fiat-utils (1.2.0-4~exp1)
- Fortran IFS and Arpege Toolkit - utilities
- fml-asm (0.1+git20190320.b499514-2~0exp)
- tool for assembling Illumina short reads in small regions
- freebayes (1.3.7-1~exp+b1 [amd64, arm64, ia64, m68k, mips64el, ppc64, ppc64el, sh4], 1.3.7-1~exp [armel, armhf, i386, riscv64, s390x, sparc64])
- Bayesian haplotype-based polymorphism discovery and genotyping
- gazebo (11.10.2+dfsg-1+b1)
- Open Source Robotics Simulator - Binaries
- gazebo-common (11.10.2+dfsg-1)
- Open Source Robotics Simulator - Shared files
- gazebo-plugin-base (11.10.2+dfsg-1+b1)
- Open Source Robotics Simulator - base plug-ins
- gdal-bin (3.8.4+dfsg-2~exp1)
- Geospatial Data Abstraction Library - Utility programs
- gdal-data (3.8.4+dfsg-2~exp1)
- Geospatial Data Abstraction Library - Data files
- gdal-plugins (3.8.4+dfsg-2~exp1)
- Geospatial Data Abstraction Library - Plugins
- gerris (20131206+dfsg-19.1~exp2)
- Fluid Flow Solver
- gfsview-batch (20121130+dfsg-8.1~exp1)
- batch-version of viewer for Gerris simulation files
- gmt (6.5.0+dfsg-2~exp1)
- Generic Mapping Tools
- gmt-common (6.5.0+dfsg-2~exp1)
- Generic Mapping Tools - Architecture-independent files
- grass (8.3.2-1~exp1)
- Geographic Resources Analysis Support System (GRASS GIS)
- grass-core (8.3.2-1~exp1 [amd64, arm64, i386, mips64el, ppc64el, s390x], 8.3.2~rc1-1~exp1 [armel, armhf, m68k, riscv64, sh4])
- GRASS GIS core components
- grass-gui (8.3.2-1~exp1 [amd64, arm64, i386, mips64el, ppc64el, s390x], 8.3.2~rc1-1~exp1 [armel, armhf, m68k, riscv64, sh4])
- GRASS GIS graphical user interfaces
- hdf5-filter-plugin-zfp-serial (1.1.0+git20230428-0+exp2)
- Compression plugin for the HDF5 library using ZFP compression
- hdf5-helpers (1.14.3+repack1-1~exp2 [amd64, arm64, i386, ppc64, ppc64el, x32], 1.12.2+repack-1~exp1 [alpha, armel, armhf, hppa, ia64, m68k, mips64el, riscv64, s390x, sh4, sparc64])
- HDF5 - Helper tools
- hdf5-tools (1.14.3+repack1-1~exp2 [amd64, arm64, i386, ppc64, ppc64el, x32], 1.12.2+repack-1~exp1 [alpha, armel, armhf, hppa, ia64, m68k, mips64el, riscv64, s390x, sh4, sparc64])
- HDF5 - Runtime tools
- heudiconv (0.13.1-1)
- DICOM converter with support for structure heuristics
- hisat2 (2.2.1-5~0exp)
- graph-based alignment of short nucleotide reads to many genomes
- jellyfish (2.3.1-2.1~exp1)
- count k-mers in DNA sequences
- jellyfish-examples (2.3.1-2.1~exp1)
- count k-mers in DNA sequences (examples for testing)
- khmer (3.0.0~a3+dfsg-9~0exp)
- in-memory DNA sequence kmer counting, filtering & graph traversal
- khmer-common (3.0.0~a3+dfsg-9~0exp)
- common files for the khmer project tools
- kstars (5:3.6.7-1)
- desktop planetarium, observation planning and telescope control
- kstars-data (5:3.6.7-1)
- data files for KStars desktop planetarium
- lammps (20240207+dfsg-1.1~exp1)
- Molecular Dynamics Simulator
- libghemical-data (3.0.0-4.4~exp1)
- Molecular Modelling Library (data files)
- libhdf5-jni (1.14.3+repack1-1~exp2 [amd64, arm64, i386, ppc64, ppc64el, x32], 1.12.2+repack-1~exp1 [alpha, armel, armhf, ia64, m68k, mips64el, riscv64, s390x, sh4, sparc64])
- native library used by libhdf5-java
- liblammps-dev (20240207+dfsg-1.1~exp1)
- Molecular Dynamics Simulator (dev files)
- liblammps0t64 (20240207+dfsg-1.1~exp1)
- Molecular Dynamics Simulator (shared library)
- liblinear-tools (2.43+dfsg-1)
- Standalone applications for LIBLINEAR
- libncarg-bin (6.6.2.dfsg.1-4.1~exp1)
- NCAR command-language library - development tools
- libncarg-data (6.6.2.dfsg.1-4.1~exp1)
- NCAR command-language library - Data
- libpluto-sat-code-dev (0.0~git20180301-1)
- development files for prediction of orbits of earth satellites
- libqgis-customwidgets (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS custom widgets for Qt Designer
- libsilo-bin (4.11-3.1~exp1)
- Utilities to manipulate libsilo files
- libtorch-test (2.1.2+dfsg-1)
- Tensors and Dynamic neural networks in Python (Test Binaries)
- libxy-bin (1.6-3.1~exp1)
- xylib - utilities
- libyade (2024.00a~git~ga581-1~exp2)
- Platform for discrete element modeling. Libraries
- liggghts (3.8.0+repack1-9.1~exp1)
- Open Source DEM Particle Simulation Software.
- lttoolbox-dev (3.7.1-2) [debports]
- Development tools and library for lttoolbox
- lua-cnrun (2.1.0-3)
- NeuroML-capable neuronal network simulator (Lua package)
- m2m-aligner (1.2-2)
- many-to-many alignments for string transduction
- mandelbrot-solver (3.2.1-10.1~exp1)
- Solver for Mandelbrot polynomials based on MPSolve
- mia-doctools (2.4.7-13.1~exp1)
- Helper scripts for run-time document creation
- mia-tools (2.4.7-13.1~exp1)
- Command line tools for gray scale image processing
- minimap2 (2.24+dfsg-4~0exp+b2 [amd64, arm64, armel, armhf, hppa, i386, mips64el, ppc64el, s390x], 2.24+dfsg-4~0exp+b1 [ia64, m68k, riscv64, sh4])
- versatile pairwise aligner for genomic and spliced nucleotide sequences
- mmb (4.0.0+dfsg-3.1~exp1)
- model the structure and dynamics of macromolecules
- mmb-common (4.0.0+dfsg-3.1~exp1)
- model the structure and dynamics of macromolecules (common files)
- mpsolve (3.2.1-10.1~exp1)
- Multiprecision polynomial solver (command line version)
- mrpt-apps (1:2.12.0+ds-1 [amd64, arm64, i386, ppc64, ppc64el], 1:2.11.10+ds-1.1~exp1 [armel, armhf, mips64el, riscv64, s390x])
- Mobile Robot Programming Toolkit - Console and GUI applications
- mrpt-common (1:2.12.0+ds-1)
- Mobile Robot Programming Toolkit - Example datasets and files
- music-bin (1.2.1-0.3~exp1)
- Multi-Simulation Coordinator for MPI -- Utilities
- ncbi-cn3d (3.0.20170106+dfsg2-1~exp2)
- 3-dimensional viewer for biological molecules
- ncbi-rrna-data (6.1.20170106+dfsg2-1~exp2)
- large rRNA BLAST databases distributed with the NCBI toolkit
- ncbi-tools-bin (6.1.20170106+dfsg2-1~exp2)
- NCBI libraries for biology applications (text-based utilities)
- ncbi-tools-x11 (6.1.20170106+dfsg2-1~exp2)
- NCBI libraries for biology applications (X-based utilities)
- ncl-ncarg (6.6.2.dfsg.1-4.1~exp1)
- NCAR Command Language and NCAR graphics
- ngmlr (0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde)
- CoNvex Gap-cost alignMents for Long Reads
- occt-draw (7.7.1+dfsg1-1~exp2)
- Open CASCADE Technology command interpreter and graphical test system
- octomap-tools (1.9.7+dfsg-3.1~exp1)
- Tools for 3D occupancy grid mapping
- octovis (1.9.7+dfsg-3.1~exp1)
- Visualization tool for OctoMap
- odil (0.12.2-4.1~exp1)
- C++11 library for the DICOM standard (application)
- ompl-plannerarena (1.5.2+ds1-1.1~exp1)
- Open Motion Planning Library (OMPL) plannerarena
- open3d-gui (0.18.0+ds-3.1~exp1)
- Transitional dummy package for open3d-viewer
- open3d-tools (0.18.0+ds-3.1~exp1)
- Library for 3D data processing - tools
- open3d-viewer (0.18.0+ds-3.1~exp1)
- Library for 3D data processing - viewer GUI
- open3d-viewer-data (0.18.0+ds-3.1~exp1)
- Library for 3D data processing - viewer GUI resources
- openstructure (2.6.1-1~exp [amd64, mips64el], 2.6.0~rc-1~exp [sh4])
- Open-Source Computational Structural Biology Framework
- openturns-common (1.22-1)
- generic tool to treat and quantify uncertainties (common files)
- otf2-tools (3.0.3-3.1~exp1)
- Open Trace Format support library - tools
- ovito (3.9.4~ds-2)
- Scientific data visualization and analysis software for atomistic and molecular
- phonetisaurus (0.7.8-6+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips64el, ppc64, ppc64el, s390x, sparc64, x32], 0.7.8-6 [sh4])
- Grapheme to Phoneme conversion tool
- pktools (2.6.7.6+ds-5~exp1)
- GDAL add-on tools to perform useful raster processing
- plink2 (2.00~a3.5-220809+dfsg-2~0exp0simde) [debports]
- whole-genome association analysis toolset
- pluto-find-orb (0.0~git20180227-5)
- orbit assessment from asteroid images
- pluto-sat-code (0.0~git20180301-1)
- prediction of orbits of earth satellites
- q2-phylogeny (2022.11.1-1)
- QIIME 2 plugin for phylogeny
- qgis (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- Geographic Information System (GIS)
- qgis-api-doc (3.34.4+dfsg-2~exp1)
- QGIS API documentation
- qgis-common (3.34.4+dfsg-2~exp1)
- QGIS - architecture-independent data
- qgis-plugin-grass (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- GRASS plugin for QGIS
- qgis-plugin-grass-common (3.34.4+dfsg-2~exp1)
- GRASS plugin for QGIS - architecture-independent data
- qgis-provider-grass (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- GRASS provider for QGIS
- qgis-providers (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- collection of data providers to QGIS
- qgis-providers-common (3.34.4+dfsg-2~exp1)
- collection of data providers to QGIS - architecture-independent files
- qgis-server (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services
- qgis-server-bin (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (executables)
- qgis-server-common (3.34.4+dfsg-2~exp1)
- QGIS server providing various OGC services (data)
- qgis-server-dummy (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (dummy)
- qgis-server-landingpage (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (landing page)
- qgis-server-wcs (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (WCS)
- qgis-server-wfs (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (WFS)
- qgis-server-wfs3 (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (WFS 3)
- qgis-server-wms (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (WMS)
- qgis-server-wmts (3.34.4+dfsg-2~exp1 [amd64, arm64, armel, armhf, i386, mips64el, ppc64el, riscv64, s390x, sh4], 3.28.15+dfsg-2~exp1 [hppa])
- QGIS server providing various OGC services (WMTS)
- rapmap (0.15.0+dfsg-4~0exp0simde)
- rapid sensitive and accurate DNA read mapping via quasi-mapping
- rapmap-dev (0.15.0+dfsg-4~0exp0simde)
- rapmap - rapid sensitive and accurate DNA read mapping (some headers)
- rapmap-example-data (0.15.0+dfsg-4~0exp0simde)
- example data for rapmap - rapid sensitive and accurate DNA read mapping
- sasview (5.0.5-2)
- Small Angle Scattering Analysis suite
- scrappie (1.4.2-9~0exp0simde)
- basecaller for Nanopore sequencer
- sequitur-g2p (0+r1668.r3-1)
- Grapheme to Phoneme conversion tool
- spoa (4.0.8-2~0exp0simde)
- SIMD partial order alignment tool
- ssw-align (1.2.5-1)
- Smith-Waterman aligner based on libssw
- staden (2.0.0+b11-5~rc1) [debports]
- DNA sequence assembly (Gap4/Gap5), editing and analysis tools
- starpu-examples (1.4.3+dfsg-2.1~exp1)
- Task scheduler for heterogeneous multicore machines - exs
- sump-logicanalyzer (0.8-1)
- GUI controlling multiple logic analysers
- tinysvm (0.09+dfsg-2)
- SVM trainer and classifier toolkit
- vowpal-wabbit (8.6.1.dfsg1-1.1~exp1) [debports]
- fast and scalable online machine learning algorithm
- xcas (1.9.0.69+dfsg2-1.1~exp1)
- Computer Algebra System - console and graphical calculator
- xmpsolve (3.2.1-10.1~exp1)
- Multiprecision polynomial solver (graphical version)
- yade (2024.00a~git~ga581-1~exp2)
- Platform for discrete element modeling
- yamcha (0.33-2)
- general purpose chunker annotator
- yorick-optimpack (1.4.0~pre1+dfsg-1~exp0)
- optimization of large scale problems for the Yorick language