Package: ragout (2.3-2 and others)

[ Source: ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

Other Packages Related to ragout

• dep: libc6 (>= 2.14) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx (>= 2.2)

  tool to create, manipulate and study complex networks (Python3)

• rec: sibelia

  comparative genomics tool

Download ragout

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	2.3-2+b1	2,074.3 kB	9,683.0 kB	[list of files]
arm64	2.3-2+b1	2,068.8 kB	9,655.0 kB	[list of files]
armel	2.3-2+b1	2,069.2 kB	9,649.0 kB	[list of files]
armhf	2.3-2+b1	2,068.4 kB	9,613.0 kB	[list of files]
i386	2.3-2+b1	2,085.8 kB	9,689.0 kB	[list of files]
mips64el	2.3-2+b1	2,079.0 kB	9,721.0 kB	[list of files]
mipsel	2.3-2+b1	2,079.0 kB	9,718.0 kB	[list of files]
ppc64el	2.3-2+b1	2,084.3 kB	9,823.0 kB	[list of files]
s390x	2.3-2+b1	2,071.4 kB	9,687.0 kB	[list of files]