Package: mummer (3.23+dfsg-7)

[ Source: mummer  ]

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::TODO, Supports Format: Plain Text, Works with: Need an extra tag

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Architecture	Package Size	Installed Size	Files
amd64	648.7 kB	3,321.0 kB	[list of files]
arm64	625.1 kB	3,153.0 kB	[list of files]
armel	617.5 kB	3,092.0 kB	[list of files]
armhf	614.6 kB	2,868.0 kB	[list of files]
i386	654.1 kB	3,304.0 kB	[list of files]
mips64el	655.4 kB	3,535.0 kB	[list of files]
mipsel	652.7 kB	3,360.0 kB	[list of files]
ppc64el	659.9 kB	4,086.0 kB	[list of files]
s390x	628.2 kB	3,309.0 kB	[list of files]