all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: maffilter  ]

Package: maffilter (1.3.1+dfsg-2 and others)

Links for maffilter

Screenshot

Debian Resources:

Download Source Package maffilter:

Maintainers:

External Resources:

Similar packages:

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Other Packages Related to maffilter

  • depends
  • recommends
  • suggests
  • enhances

Download maffilter

Download for all available architectures
Architecture Version Package Size Installed Size Files
amd64 1.3.1+dfsg-2+b1 255.5 kB1,321.0 kB [list of files]
arm64 1.3.1+dfsg-2+b1 235.9 kB1,281.0 kB [list of files]
armel 1.3.1+dfsg-2+b1 218.3 kB1,148.0 kB [list of files]
armhf 1.3.1+dfsg-2+b1 223.5 kB1,020.0 kB [list of files]
i386 1.3.1+dfsg-2+b1 262.6 kB1,300.0 kB [list of files]
mips64el 1.3.1+dfsg-2+b1 220.0 kB1,456.0 kB [list of files]
mipsel 1.3.1+dfsg-2+b1 222.4 kB1,385.0 kB [list of files]
ppc64el 1.3.1+dfsg-2+b1 254.2 kB1,433.0 kB [list of files]
s390x 1.3.1+dfsg-2+b1 234.7 kB1,333.0 kB [list of files]