Package: jellyfish1 (1.1.11-5)

[ Source: jellyfish1  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This is the latest version of the 1.x series of jellyfish which is used by some other applications that are not compatible with version 2.x which is provided inside the jellyfish package.

Other Packages Related to jellyfish1

• dep: libc6 (>= 2.14) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

• enh: kraken

  assigning taxonomic labels to short DNA sequences

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Architecture	Package Size	Installed Size	Files
amd64	128.3 kB	656.0 kB	[list of files]
arm64	128.3 kB	624.0 kB	[list of files]
armel	126.1 kB	607.0 kB	[list of files]
armhf	126.4 kB	535.0 kB	[list of files]
i386	151.4 kB	675.0 kB	[list of files]
mips64el	116.4 kB	740.0 kB	[list of files]
ppc64el	129.5 kB	748.0 kB	[list of files]
s390x	129.6 kB	660.0 kB	[list of files]