Package: cd-hit (4.8.1-3)

[ Source: cd-hit  ]

suite of programs designed to quickly group sequences

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, use::comparing, Works with: Biological Sequence

Other Packages Related to cd-hit

• dep: libc6 (>= 2.14) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

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Architecture	Package Size	Installed Size	Files
amd64	510.1 kB	1,411.0 kB	[list of files]
arm64	493.7 kB	1,309.0 kB	[list of files]
armel	492.1 kB	1,319.0 kB	[list of files]
armhf	487.5 kB	1,111.0 kB	[list of files]
i386	510.9 kB	1,477.0 kB	[list of files]
mips64el	510.7 kB	1,588.0 kB	[list of files]
mipsel	511.1 kB	1,541.0 kB	[list of files]
ppc64el	508.6 kB	1,813.0 kB	[list of files]
s390x	496.5 kB	1,429.0 kB	[list of files]