Package: pizzly (0.37.3+ds-5)

[ Source: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.29) [not armel]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.30) [armel]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 10.2) [armel]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 7) [armhf]

  dep: libstdc++6 (>= 9) [not armel, armhf]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

• rec: python3-h5py

  general-purpose Python interface to hdf5

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Architecture	Package Size	Installed Size	Files
amd64	287.4 kB	876.0 kB	[list of files]
arm64	251.7 kB	808.0 kB	[list of files]
armel	240.5 kB	763.0 kB	[list of files]
armhf	251.0 kB	591.0 kB	[list of files]
i386	296.3 kB	883.0 kB	[list of files]
mips64el	245.9 kB	962.0 kB	[list of files]
mipsel	250.7 kB	940.0 kB	[list of files]
ppc64el	282.7 kB	988.0 kB	[list of files]
s390x	249.6 kB	876.0 kB	[list of files]