Package: covtobed-examples (1.2.0+dfsg-1)

[ Source: covtobed  ]

example data and scripts for mindthegap

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

This package is meant to accommodate covtobed.

Other Packages Related to covtobed-examples

• rec: covtobed

  convert the coverage track from a BAM file into a BED file

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