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[ Source: bedtools  ]

Package: bedtools (2.30.0+dfsg-1)

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suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Suite, Purpose: use::analysing, use::comparing, Data Conversion, use::filtering, works-with::biological-sequence

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Download bedtools

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 647.5 kB2,060.0 kB [list of files]
arm64 565.4 kB1,864.0 kB [list of files]
armel 535.4 kB1,759.0 kB [list of files]
armhf 559.3 kB1,275.0 kB [list of files]
i386 708.4 kB2,275.0 kB [list of files]
mips64el 585.1 kB2,591.0 kB [list of files]
mipsel 603.6 kB2,459.0 kB [list of files]
ppc64el 663.0 kB2,520.0 kB [list of files]
s390x 567.1 kB2,100.0 kB [list of files]