Package: python3-pairtools (1.0.2-2 and others)

[ Source: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Other Packages Related to python3-pairtools

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.14) [amd64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-bioframe

  library to enable flexible, scalable operations on genomic interval dataframes

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-numpy (>= 1:1.22.0)

  Fast array facility to the Python 3 language

• dep: python3-numpy-abi9

  virtual package provided by python3-numpy

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam (>= 0.20.0+ds-3~)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• sug: python3-pairtools-examples (>= 1.0.2)

  Process sequencing data from a Hi-C experiment (examples)

Download python3-pairtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.0.2-2+b1	161.5 kB	685.0 kB	[list of files]
arm64	1.0.2-2+b1	147.9 kB	702.0 kB	[list of files]
armel	1.0.2-2+b1	144.8 kB	622.0 kB	[list of files]
armhf	1.0.2-2+b1	144.9 kB	554.0 kB	[list of files]
i386	1.0.2-2+b1	160.8 kB	674.0 kB	[list of files]
mips64el	1.0.2-2+b1	146.4 kB	776.0 kB	[list of files]
mipsel	1.0.2-2+b1	144.8 kB	702.0 kB	[list of files]
ppc64el	1.0.2-2+b1	158.4 kB	766.0 kB	[list of files]