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[ Source: libbio-samtools-perl  ]

Package: libbio-samtools-perl (1.20-1)

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read SAM/BAM nucleotide sequence aligment database files

Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application.

Tags: Software Development: Perl Development, Libraries, Implemented in: C, Perl, Role: Shared Library

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Architecture Package Size Installed Size Files
amd64 201.1 kB576.0 kB [list of files]
i386 203.0 kB580.0 kB [list of files]
ia64 262.7 kB916.0 kB [list of files]
kfreebsd-amd64 201.6 kB522.0 kB [list of files]
kfreebsd-i386 203.4 kB538.0 kB [list of files]
mips 193.3 kB688.0 kB [list of files]
mipsel 193.9 kB688.0 kB [list of files]
powerpc 200.4 kB584.0 kB [list of files]
s390 198.9 kB600.0 kB [list of files]