Paquet : fastahack (1.0.0+dfsg-11) [debports]
Liens pour fastahack
Ressources Debian :
Télécharger le paquet source :
IntrouvableResponsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Autres paquets associés à fastahack
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- dep: libc6 (>= 2.34)
- bibliothèque C GNU : bibliothèques partagées
un paquet virtuel est également fourni par libc6-udeb
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 1.0.0+dfsg)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 3.0)
- bibliothèque de prise en charge de GCC
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- dep: libstdc++6 (>= 13.1)
- bibliothèque standard C++ de GNU v3
Télécharger fastahack
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
x32 (portage non officiel) | 12,0 ko | 39,0 ko | [liste des fichiers] |