Paquet : parallel-fastq-dump (0.6.7-3)

[ Paquet source : parallel-fastq-dump  ]

parallel fastq-dump wrapper

NCBI fastq-dump can be very slow sometimes, even if you have the resources (network, IO, CPU) to go faster, even if you already downloaded the sra file. This tool speeds up the process by dividing the work into multiple threads.

This is possible because fastq-dump have options (-N and -X) to query specific ranges of the sra file, this tool works by dividing the work into the requested number of threads, running multiple fastq-dump in parallel and concatenating the results back together, as if you had just executed a plain fastq-dump call.

Autres paquets associés à parallel-fastq-dump

• dep: python3

  langage orienté objet interactif de haut niveau – version par défaut de Python 3

• dep: sra-toolkit

  utilities for the NCBI Sequence Read Archive

Télécharger parallel-fastq-dump

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	5,5 ko	24,0 ko	[liste des fichiers]
arm64	5,5 ko	24,0 ko	[liste des fichiers]
x32 (portage non officiel)	5,5 ko	24,0 ko	[liste des fichiers]