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[ Paquet source : libseqlib  ]

Paquet : libseqlib1 (1.1.2+dfsg-3)

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C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

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Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 113,7 ko397,0 ko [liste des fichiers]
kfreebsd-amd64 114,1 ko389,0 ko [liste des fichiers]