Paquet : r-bioc-ensembldb (2.26.0+dfsg-1)

[ Paquet source : r-bioc-ensembldb  ]

GNU R utilities to create and use an Ensembl based annotation database

The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve all gene/transcript models and annotations from the database, the ensembldb package provides also a filter framework allowing to retrieve annotations for specific entries like genes encoded on a chromosome region or transcript models of lincRNA genes.

Autres paquets associés à r-bioc-ensembldb

• dep: r-api-4.0

  paquet virtuel fourni par r-base-core

• dep: r-api-bioc-3.18

  paquet virtuel fourni par r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.31.19)

  GNU R Annotation Database Interface pour BioConductor

• dep: r-bioc-annotationfilter (>= 1.5.2)

  fonctions pour le filtrage des ressources d'annotation de BioConductor

• dep: r-bioc-biobase

  fonctions de base pour Bioconductor

• dep: r-bioc-biocgenerics (>= 0.15.10)

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• dep: r-bioc-biostrings (>= 2.47.9)

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• dep: r-bioc-genomeinfodb

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• dep: r-bioc-genomicfeatures (>= 1.49.6)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.31.18)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.24)

  conteneurs de bas niveau de GNU R de stockage de plages d’entiers

• dep: r-bioc-protgenerics

  S4 generic functions for Bioconductor proteomics infrastructure

• dep: r-bioc-rsamtools

  importation de fichiers BAM, BCF et tabix pour GNU R

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.23.10)

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• dep: r-cran-curl

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• dep: r-cran-dbi

  paquet de GNU R fournissant une interface généraliste de base de données

• dep: r-cran-rsqlite (>= 1.1)

  Database Interface R driver for SQLite

• sug: r-bioc-annotationhub

  client GNU R pour accéder aux ressources d'AnnotationHub

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-ggbio (>= 1.24.0)

  Visualization tools for genomic data

• sug: r-bioc-gviz (>= 1.20.0)

  Plotting data and annotation information along genomic coordinates

• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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