Paquet : python-pyfaidx-examples (0.8.1.1-1)

[ Paquet source : python-pyfaidx  ]

example data for efficient random access to fasta subsequences for Python

Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.

This package provides example data to test the Python modules.

Autres paquets associés à python-pyfaidx-examples

• sug: python3-pyfaidx

  efficient random access to fasta subsequences for Python 3

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