Paquet : pscan-tfbs (1.2.2-3)

[ Paquet source : pscan-tfbs  ]

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

Autres paquets associés à pscan-tfbs

• dep: libc6 (>= 2.14) [amd64]

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.3.1) [non armhf]

  bibliothèque de prise en charge de GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libgsl23 (>= 2.5)

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.4)

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 5.2)

  bibliothèque standard C++ de GNU v3

Télécharger pscan-tfbs

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	67,3 ko	186,0 ko	[liste des fichiers]
arm64	60,3 ko	157,0 ko	[liste des fichiers]
armhf	59,2 ko	121,0 ko	[liste des fichiers]
i386	72,7 ko	196,0 ko	[liste des fichiers]