Paquet : plip (1.4.3~b+dfsg-2)

[ Paquet source : plip  ]

fully automated protein-ligand interaction profiler

The Protein-Ligand Interaction Profiler (PLIP) is a tool to analyze and visualize protein-ligand interactions in PDB files.

Features include:

 * Detection of eight different types of noncovalent interactions
 * Automatic detection of relevant ligands in a PDB file
 * Direct download of PDB structures from wwPDB server if valid
   PDB ID is given
 * Processing of custom PDB files containing protein-ligand complexes
   (e.g. from docking)
 * No need for special preparation of a PDB file, works out of the box
 * Atom-level interaction reports in rST and XML formats for easy parsing
 * Generation of PyMOL session files (.pse) for each pairing, enabling easy
   preparation of images for publications and talks
 * Rendering of preview image for each ligand and its interactions
   with the protein

Autres paquets associés à plip

• dep: python

  langage interactif de haut niveau orienté objet (version Python2)

• dep: python-future

  single-source support for Python 3 and 2 - Python 2.x

• dep: python-lxml

  liaison Python pour les bibliothèques libxml2 et libxslt

• dep: python-numpy

  gestion rapide des tableaux avec Python

• dep: python-openbabel

  Chemical toolbox library (python bindings)

• sug: pymol

  système de graphismes moléculaires

Télécharger plip

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	67,5 ko	303,0 ko	[liste des fichiers]