Paquet : spaced (1.2.0-201605+dfsg-2)

[ Paquet source : spaced  ]

alignment-free sequence comparison using spaced words

Spaced (Words) is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, spaced uses a pattern of care and don't care positions. The occurrence of a spaced word in a sequence is then defined by the characters at the match positions only, while the characters at the don't care positions are ignored. Instead of comparing the frequencies of contiguous words in the input sequences, this new approach compares the frequencies of the spaced words according to the pre-defined pattern. An information-theoretic distance measure is then used to define pairwise distances on the set of input sequences based on their spaced-word frequencies. Systematic test runs on real and simulated sequence sets have shown that, for phylogeny reconstruction, this multiple-spaced-words approach is far superior to the classical alignment-free approach based on contiguous word frequencies.

Autres paquets associés à spaced

• dep: libc6 (>= 2.29)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libgcc-s1 (>= 3.0) [non armel, armhf, mipsel]

  bibliothèque de prise en charge de GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 9)

  bibliothèque GCC pour OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  bibliothèque standard C++ de GNU v3

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Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	54,8 ko	153,0 ko	[liste des fichiers]
arm64	48,6 ko	133,0 ko	[liste des fichiers]
armel	48,1 ko	132,0 ko	[liste des fichiers]
armhf	47,9 ko	96,0 ko	[liste des fichiers]
i386	61,2 ko	160,0 ko	[liste des fichiers]
mips64el	54,1 ko	176,0 ko	[liste des fichiers]
mipsel	58,3 ko	179,0 ko	[liste des fichiers]
ppc64el	59,4 ko	209,0 ko	[liste des fichiers]
s390x	49,7 ko	153,0 ko	[liste des fichiers]