Paquet : density-fitness (1.0.0-2)

[ Paquet source : density-fitness  ]

Calculates per-residue electron density scores

The program density-fitness calculates electron density metrics, for main- (includes Cβ atom) and side-chain atoms of individual residues.

For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data.

This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients.

Autres paquets associés à density-fitness

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  bibliothèque Boost.Iostreams

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  bibliothèque d'options de programmes pour C++

• dep: libc6 (>= 2.4)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libcifpp1 (>= 1.0.1)

  Library files for libcifpp

• dep: libclipper2 (>= 2.1.20201109)

  object oriented library for crystallographic computing

• dep: libgcc-s1 (>= 3.0)

  bibliothèque de prise en charge de GCC

• dep: libpdb-redo1 (>= 1.0.1)

  Library file for libpdb-redo

• dep: libstdc++6 (>= 9)

  bibliothèque standard C++ de GNU v3

• dep: libzeep5 (>= 5.0.2)

  Library file for libzeep

Télécharger density-fitness

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
mipsel	95,2 ko	405,0 ko	[liste des fichiers]