Paquet : trf (4.09.1-6)

[ Paquet source : trf  ]

locate and display tandem repeats in DNA sequences

A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.

Autres paquets associés à trf

• dep: libc6 (>= 2.34)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

Télécharger trf

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	56,9 ko	167,0 ko	[liste des fichiers]
arm64	52,9 ko	183,0 ko	[liste des fichiers]
armel	55,4 ko	182,0 ko	[liste des fichiers]
armhf	53,0 ko	182,0 ko	[liste des fichiers]
i386	55,7 ko	166,0 ko	[liste des fichiers]
mips64el	55,3 ko	187,0 ko	[liste des fichiers]
mipsel	54,7 ko	186,0 ko	[liste des fichiers]
ppc64el	58,0 ko	183,0 ko	[liste des fichiers]
s390x	53,8 ko	163,0 ko	[liste des fichiers]