Paketti: python3-biopython (1.83+dfsg1-2 ja muut)

[ Source: python-biopython  ]

Python3 library for bioinformatics

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project.

Muut pakettiin python3-biopython liittyvät paketit

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.34) [armel, armhf, m68k]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [i386, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.4) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

• dep: python3 [ei hppa]

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13) [ei hppa, sparc64, x32]

  dep: python3 (<< 3.5) [hppa]

  dep: python3 (<< 3.7) [sparc64]

  dep: python3 (<< 3.9) [x32]

  dep: python3 (>= 3.11~) [ei hppa, sparc64, x32]

  dep: python3 (>= 3.4~) [hppa]

  dep: python3 (>= 3.5~) [sparc64]

  dep: python3 (>= 3.8~) [x32]

• dep: python3-numpy (>= 1:1.10.0~b1) [sparc64]

  Fast array facility to the Python language (Python 3)

  dep: python3-numpy (>= 1:1.16.0~rc1) [x32]

  dep: python3-numpy (>= 1:1.25.0) [ei hppa, sparc64, x32]

  dep: python3-numpy (>= 1:1.8.0) [hppa]

• dep: python3-numpy-abi9

  näennäispaketti, jonka toteuttaa python3-numpy

• dep: python3-reportlab [hppa, sparc64, x32]

  ReportLab library to create PDF documents using Python3

  dep: python3-reportlab (>= 4.0.4-1~) [ei hppa, sparc64, x32]

• dep: w3c-sgml-lib [ei hppa, sparc64, x32]

  w3.org DTD and catalog files

• rec: ncbi-blast+ [hppa, sparc64]

  next generation suite of BLAST sequence search tools

  rec: ncbi-blast+ (>= 2.10.0-3) [x32]

  rec: ncbi-blast+ (>= 2.10.1-3) [ei hppa, sparc64, x32]

• rec: python-biopython-doc (= 1.65+dfsg-1) [hppa]

  Documentation for the Biopython library

  rec: python-biopython-doc (= 1.70+dfsg-2) [sparc64]

  rec: python-biopython-doc (= 1.78+dfsg-2) [x32]

  rec: python-biopython-doc (= 1.83+dfsg1-1) [alpha, arm64, armel, ppc64]

  rec: python-biopython-doc (= 1.83+dfsg1-2) [ei alpha, arm64, armel, hppa, ppc64, sparc64, x32]

• sug: bwa [ei hppa, sparc64]

  Burrows-Wheeler Aligner

• sug: clustalo

  General-purpose multiple sequence alignment program for proteins

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: dialign

  Segment-based multiple sequence alignment

• sug: dssp

  protein secondary structure assignment based on 3D structure

• sug: emboss

  European molecular biology open software suite

• sug: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: muscle [hppa, sparc64, x32]

  Multiple alignment program of protein sequences

• sug: muscle3 [ei hppa, sparc64, x32]

  multiple alignment program of protein sequences

• sug: phylip [ei hppa]

  package of programs for inferring phylogenies

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: prank

  Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

• sug: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• sug: python-mysqldb [hppa, sparc64]

  Paketti ei saatavilla

• sug: python-reportlab [hppa, sparc64]

  Paketti ei saatavilla

• sug: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• sug: python3-mmtf [ei hppa, sparc64]

  binary encoding of biological structures (Python 3)

• sug: python3-mysqldb [ei hppa, sparc64]

  Python interface to MySQL

• sug: python3-pil

  Python Imaging Library (Python3)

• sug: python3-psycopg2

  Python 3 module for PostgreSQL

• sug: python3-rdflib [ei hppa]

  Python 3 library containing an RDF triple store and RDF parsers/serializers

  sug: python3-rdflib (>= 4) [hppa]

• sug: python3-renderpm [hppa, sparc64, x32]

  näennäispaketti, jonka toteuttaa python3-reportlab

• sug: python3-scipy [ei hppa]

  scientific tools for Python 3

• sug: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• sug: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• sug: t-coffee

  Multiple Sequence Alignment

• sug: w3-dtd-mathml [x32]

  Mathematical Markup Language V2.0 DTD

• sug: wise [ei hppa, sparc64]

  comparison of biopolymers, like DNA and protein sequences

  sug: wise (>= 2.4.1-16) [hppa, sparc64]

Imuroi python3-biopython

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.83+dfsg1-1	1,587.0 kt	12,659.0 kt	[tiedostoluettelo]
amd64	1.83+dfsg1-2	1,595.9 kt	11,819.0 kt	[tiedostoluettelo]
arm64	1.83+dfsg1-1	1,582.2 kt	12,591.0 kt	[tiedostoluettelo]
armel	1.83+dfsg1-1	1,578.1 kt	11,719.0 kt	[tiedostoluettelo]
armhf	1.83+dfsg1-2	1,563.2 kt	11,503.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.65+dfsg-1	1,119.5 kt	7,788.0 kt	[tiedostoluettelo]
i386	1.83+dfsg1-2	1,588.5 kt	11,805.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.83+dfsg1-2	1,563.7 kt	11,647.0 kt	[tiedostoluettelo]
mips64el	1.83+dfsg1-2	1,574.5 kt	12,677.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.83+dfsg1-1	1,610.9 kt	12,655.0 kt	[tiedostoluettelo]
ppc64el	1.83+dfsg1-2	1,614.8 kt	12,657.0 kt	[tiedostoluettelo]
riscv64	1.83+dfsg1-2	1,590.8 kt	11,625.0 kt	[tiedostoluettelo]
s390x	1.83+dfsg1-2	1,610.9 kt	11,845.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.83+dfsg1-2	1,626.3 kt	12,503.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.70+dfsg-2	1,139.3 kt	8,250.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.78+dfsg-2	1,365.8 kt	9,193.0 kt	[tiedostoluettelo]