Paketti: r-bioc-rtracklayer (1.62.0-1)

[ Source: r-bioc-rtracklayer  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Muut pakettiin r-bioc-rtracklayer liittyvät paketit

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.18

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.35.3)

  generic functions for Bioconductor

• dep: r-bioc-biocio

  standard input and output for Bioconductor packages

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.37.2)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.13)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.23.18)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.19.7)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-rcurl (>= 1.4-2)

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-restfulr (>= 0.0.13)

  GNU R interface to RESTful web wervices

• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

• sug: r-bioc-bsgenome (>= 1.33.4)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• sug: r-cran-runit

  GNU R package providing unit testing framework

Imuroi r-bioc-rtracklayer

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
ppc64el	4,994.2 kt	6,908.0 kt	[tiedostoluettelo]