Paketti: libvcflib-tools (1.0.9+dfsg1-3 ja muut)

[ Source: libvcflib  ]

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Muut pakettiin libvcflib-tools liittyvät paketit

• dep: libbz2-1.0 [sparc64]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34) [ei alpha, ia64, sh4]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.35) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, ia64, mips64el, ppc64el, sparc64]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 1.0.0+dfsg) [alpha, m68k, ppc64, riscv64, sh4, x32]

• dep: libgcc-s1 (>= 3.0) [x32]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, mips64el]

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC:n apukirjasto

• dep: libgomp1 (>= 4.2.1) [ei ia64, m68k, ppc64, sh4, x32]

  GCC OpenMP (GOMP) support library

• dep: libhts3 (>= 1.10) [sparc64]

  C library for high-throughput sequencing data formats

• dep: liblzma5 (>= 5.1.1alpha+20110809) [sparc64]

  XZ-tiedostomuodon pakkauskirjasto

• dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

  determine similar regions between two strings or genomic sequences (lib)

• dep: libssw0 (>= 1.1) [sparc64]

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 11) [ia64, m68k, ppc64, sh4, sparc64, x32]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 13.1) [amd64, arm64, mips64el, ppc64el, riscv64]

  dep: libstdc++6 (>= 13.2.0-7) [alpha]

• dep: libtabixpp0 (>= 1.0.0) [ei amd64, arm64, mips64el, ppc64el, riscv64]

  C++ wrapper to tabix indexer

• dep: libtabixpp0t64 (>= 1.0.0) [amd64, arm64, mips64el, ppc64el, riscv64]

  C++ wrapper to tabix indexer

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libvcflib1 (>= 1.0.3+dfsg) [ia64, m68k, ppc64, sh4, sparc64, x32]

  C++ library for parsing and manipulating VCF files

• dep: libvcflib2 (>= 1.0.9+dfsg1) [alpha, amd64, arm64, mips64el, ppc64el, riscv64]

  C++ library for parsing and manipulating VCF files

• dep: libwfa2-0 (>= 2.3.3) [alpha, amd64, arm64, mips64el, ppc64el, riscv64]

  exact gap-affine algorithm (shared library)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-gridbase

  GNU R Integration of base and grid graphics

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: zlib1g (>= 1:1.1.4) [sparc64]

  pakkauskirjaston ajonaikaistiedostot

• sug: r-cran-pracma

  practical numerical math functions for GNU R

Imuroi libvcflib-tools

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.0.9+dfsg1-3	613.1 kt	6,870.0 kt	[tiedostoluettelo]
amd64	1.0.9+dfsg1-3+b1	635.3 kt	3,830.0 kt	[tiedostoluettelo]
arm64	1.0.9+dfsg1-3+b1	564.4 kt	6,594.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.0.3+dfsg-2	853.2 kt	8,189.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.0.3+dfsg-2	711.2 kt	4,531.0 kt	[tiedostoluettelo]
mips64el	1.0.9+dfsg1-3+b1	591.2 kt	6,858.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.0.3+dfsg-2	707.1 kt	8,228.0 kt	[tiedostoluettelo]
ppc64el	1.0.9+dfsg1-3+b1	624.2 kt	6,786.0 kt	[tiedostoluettelo]
riscv64	1.0.9+dfsg1-3+b1	619.9 kt	2,974.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.0.3+dfsg-2	808.7 kt	6,691.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.0.3+dfsg-2	816.8 kt	91,827.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.0.3+dfsg-2	729.6 kt	4,483.0 kt	[tiedostoluettelo]