Paketti: igdiscover (0.11-4)

[ Source: igdiscover  ]

analyzes antibody repertoires to find new V genes

IgDiscover analyzes antibody repertoires and discovers new V genes from high-throughput sequencing reads. Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes).

Muut pakettiin igdiscover liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-cutadapt

  Clean biological sequences from high-throughput sequencing reads (Python 3)

• dep: python3-matplotlib (>= 1.5.0)

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pandas (>= 0.16.2)

  data structures for "relational" or "labeled" data

• dep: python3-ruamel.yaml

  Roundtrip YAML parser/emitter (Python 3 module)

• dep: python3-scipy (>= 0.16.1)

  scientific tools for Python 3

• dep: python3-seaborn (>= 0.9)

  statistical visualization library for Python3

• dep: python3-sqt

  SeQuencing Tools for biological DNA/RNA high-throughput data

• dep: python3-xopen (>= 0.3.2)

  Python3 module to open compressed files transparently

• sug: igdiscover-doc

  analyzes antibody repertoires to find new V genes - doc

• sug: snakemake

  pythonic workflow management system

Imuroi igdiscover

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	35.9 kt	46.0 kt	[tiedostoluettelo]