Paketti: r-bioc-scran (1.30.2+dfsg-1 ja muut)

[ Source: r-bioc-scran  ]

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Muut pakettiin r-bioc-scran liittyvät paketit

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  tai libblas.so.3

  näennäispaketti, jonka toteuttaa libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27) [riscv64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.29) [ei alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC:n apukirjasto

• dep: libgfortran5 (>= 8) [sparc64]

  Runtime library for GNU Fortran applications

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  tai liblapack.so.3

  näennäispaketti, jonka toteuttaa libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 11) [x32]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 13.1) [ei x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketti ei saatavilla

• dep: r-api-bioc-3.18 [ei x32]

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular

  Singular Value Decomposition for Bioconductor Packages

• dep: r-bioc-bluster

  Clustering Algorithms for Bioconductor

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-metapod

  GNU R meta-analyses on P-Values of differential analyses

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-bh

  (Virtual) GNU R package to provide BH

• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-hdf5array

  HDF5 backend for DelayedArray objects

• sug: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-residualmatrix

  Creating a DelayedMatrix of Regression Residuals

• sug: r-bioc-scaledmatrix

  creating a DelayedMatrix of scaled and centered values using GNU R

• sug: r-bioc-scater

  Single-Cell Analysis Toolkit for Gene Expression Data in R

• sug: r-bioc-scrnaseq

  Collection of Public Single-Cell RNA-Seq Datasets

• sug: r-cran-dynamictreecut

  Methods for Detection of Clusters in Hierarchical Clustering

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Imuroi r-bioc-scran

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.30.2+dfsg-1	959.5 kt	1,476.0 kt	[tiedostoluettelo]
amd64	1.30.2+dfsg-1	967.8 kt	1,377.0 kt	[tiedostoluettelo]
arm64	1.30.2+dfsg-1	953.4 kt	1,413.0 kt	[tiedostoluettelo]
armel	1.30.2+dfsg-1	951.9 kt	1,323.0 kt	[tiedostoluettelo]
armhf	1.30.2+dfsg-1	953.4 kt	1,251.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.30.2+dfsg-1	968.1 kt	1,429.0 kt	[tiedostoluettelo]
i386	1.30.2+dfsg-1	973.2 kt	1,379.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.30.2+dfsg-1	985.8 kt	1,683.0 kt	[tiedostoluettelo]
mips64el	1.30.2+dfsg-1	950.4 kt	1,516.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.30.2+dfsg-1	968.0 kt	1,544.0 kt	[tiedostoluettelo]
ppc64el	1.30.2+dfsg-1	965.6 kt	1,477.0 kt	[tiedostoluettelo]
riscv64	1.30.2+dfsg-1	966.8 kt	1,312.0 kt	[tiedostoluettelo]
s390x	1.30.2+dfsg-1	971.3 kt	1,400.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.30.2+dfsg-1	987.2 kt	1,410.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.30.2+dfsg-1	946.3 kt	2,059.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.26.2+dfsg-1	964.7 kt	1,342.0 kt	[tiedostoluettelo]