Paketti: python3-pairtools (1.0.3-1)

[ Source: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Muut pakettiin python3-pairtools liittyvät paketit

• dep: libc6 (>= 2.4)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 11)

  GNU standardi C++ -kirjasto, versio 3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.11~)

• dep: python3-bioframe

  library to enable flexible, scalable operations on genomic interval dataframes

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-numpy (>= 1:1.22.0)

  Fast array facility to the Python language (Python 3)

• dep: python3-numpy-abi9

  näennäispaketti, jonka toteuttaa python3-numpy

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam (>= 0.20.0+ds-3~)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• sug: python3-pairtools-examples (>= 1.0.2)

  Process sequencing data from a Hi-C experiment (examples)

Imuroi python3-pairtools

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