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[ Source: beagle  ]

Paketti: beagle (220722-1)

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Genotype calling, genotype phasing and imputation of ungenotyped markers

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::java, interface::commandline, Role: Program, Purpose: Analysing

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all 352.8 kt732.0 kt [tiedostoluettelo]