Paketti: kleborate (2.4.1-3) [debports]
Links for kleborate
Debian-palvelut:
Imuroi lähdekoodipaketti :
Ei löytynytYlläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
tool to screen Klebsiella genome assemblies
Kleborate is a tool to screen Klebsiella genome assemblies for:
* MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
Muut pakettiin kleborate liittyvät paketit
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- dep: kaptive
- obtain information about K and O types for Klebsiella genome assemblies
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- dep: kaptive-data
- reference data for kaptive for Klebsiella genome assemblies
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
Imuroi kleborate
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
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alpha (epävirallinen siirros) | 7,558.8 kt | 62,170.0 kt | [tiedostoluettelo] |