Paketti: python3-cooler (0.10.2-1) [debports]

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library for a sparse, compressed, binary persistent storage

Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.

The cooler file format is an implementation of a genomic matrix data model using HDF5 as the container format. The cooler package includes a suite of command line tools and a Python API to facilitate creating, querying and manipulating cooler files.

Muut pakettiin python3-cooler liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-asciitree

  Draw tree structures using (ASCII or Unicode) characters

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-cytoolz

  Toolz in Cython: High performance functional utilities

• dep: python3-h5py (>= 2.5)

  general-purpose Python interface to hdf5

• dep: python3-multiprocess

  better multiprocessing and multithreading in Python

• dep: python3-numpy

  Python library for numerical computations (Python 3)

• dep: python3-pairix

  1D/2D indexing and querying with a pair of genomic coordinates

• dep: python3-pandas (>= 2.1)

  data structures for "relational" or "labeled" data

• dep: python3-pyfaidx

  efficient random access to fasta subsequences for Python 3

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy (>= 1.10~)

  scientific tools for Python 3

• dep: python3-simplejson

  simple, fast, extensible JSON encoder/decoder for Python 3.x

• dep: python3-yaml

  YAML parser and emitter for Python3

• rec: python3-dask

  Minimal task scheduling abstraction for Python 3

• sug: python3-pip

  Python package installer

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