Paketti: spades (3.13.0+dfsg2-2)

[ Source: spades  ]

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

Tagit: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Implemented in: Python, User Interface: interface::commandline, role::program, Scope: Utility, Works with: works-with::biological-sequence, works-with::file

Muut pakettiin spades liittyvät paketit

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: bwa

  Burrows-Wheeler Aligner

• dep: libc6 (>= 2.27)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc1 (>= 1:4.0)

  GCC:n apukirjasto

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libhat-trie0

  HAT-trie, an extremely efficient (space and time) modern variant of tries

• dep: libnlopt0 (>= 2.2.4)

  nonlinear optimization library

• dep: libssw0

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 6)

  GNU standardi C++ -kirjasto, versio 3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-joblib

  tools to provide lightweight pipelining in Python

• dep: python-yaml

  YAML parser and emitter for Python

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  pakkauskirjaston ajonaikaistiedostot

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	4,643.7 kt	23,056.0 kt	[tiedostoluettelo]